Protein MCP
An MCP server that provides tools to search, fetch, align, and annotate protein structures and ligands across multiple databases including RCSB PDB, AlphaFold DB, UniProt, and InterPro. It supports STDIO and Streamable HTTP transports and requires no API key.
Package and access
Local package with source-attributed installation metadata. Koskamo does not execute packages during review.
Checks and signals
Each line is separate evidence, not a trust score.
- Popularity 6 GitHub stars
What you can do with it
- Search experimental and predicted protein structures by text, sequence, or organism
- Fetch metadata and coordinate URLs for specific protein entries
- Find sequence homologs using RCSB mmseqs2 or fold homologs via Foldseek
- Align protein structures using TM-align or jFATCAT
Source and maintenance
- Last repository push
- Latest release
- v0.8.7
- Maintenance checked
Packages and installation
Source-provided package data. Koskamo has not executed or live-probed this package.
protein-mcp-server 1.0.3
{
"version": "1.0.3",
"transport": "stdio",
"identifier": "protein-mcp-server",
"runtimeHint": "bun",
"registryType": "npm",
"registryBaseUrl": "https://registry.npmjs.org",
"packageArguments": [
{
"type": "positional",
"value": "run"
},
{
"type": "positional",
"value": "start:stdio"
}
],
"environmentVariables": [
{
"name": "MCP_LOG_LEVEL",
"format": "string",
"default": "info",
"description": "Sets the minimum log level for output (e.g., 'debug', 'info', 'warn')."
}
]
}Tools
Reported by the attributed source; not independently observed by Koskamo.
Maintenance history
Public check and source-refresh events. Editorial and ownership records remain private.
- · repository · passed · metadata changed · updated
- · backfill · recorded · Pre-expansion baseline; unobserved rich metadata remains unknown
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