Koskamo

ChatSpatial MCP

ChatSpatial is an MCP server for spatial transcriptomics analysis via natural language. It exposes 20 schema-validated MCP tools that orchestrate 67 spatial transcriptomics methods across 13 analytical categories, supporting platforms like 10x Visium, Xenium, Slide-seq, and MERFISH.

Package and access

Local package with source-attributed installation metadata. Koskamo does not execute packages during review.

ChatSpatial MCP logo, by cafferychen777Community listingLocal stdioSource reviewed; not executedPublished by cafferychen777
Vendor documentation

What you can do with it

  • Analyze spatial transcriptomics data via natural language
  • Orchestrate 67 spatial transcriptomics methods
  • Support 10x Visium, Xenium, Slide-seq, and MERFISH

Source and maintenance

Community listingRegistry 1.6.0
mcp-registry: io.github.cafferychen777/chatspatial@1.6.0Source repositoryProject website
Maintenance checked

Packages and installation

Source-provided package data. Koskamo has not executed or live-probed this package.

chatspatial 1.6.0

pypiuvx
chatspatial package definition
{
  "version": "1.6.0",
  "transport": "stdio",
  "identifier": "chatspatial",
  "runtimeHint": "uvx",
  "registryType": "pypi",
  "packageArguments": [
    {
      "type": "positional",
      "value": "server"
    }
  ]
}

Tools

Reported by the attributed source; not independently observed by Koskamo.

No tool definitions available.

Connect from your client

Each snippet configures the same source-provided package; replace placeholders before use.

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Cursor

Merge this local stdio configuration, replace every placeholder environment value, and restart Cursor. Koskamo has not executed this package.
Cursor configuration
{
  "mcpServers": {
    "chatspatial-mcp": {
      "command": "uvx",
      "args": [
        "chatspatial==1.6.0",
        "server"
      ]
    }
  }
}

Cline

Merge this local stdio configuration, replace every placeholder environment value, and restart Cline. Koskamo has not executed this package.
Cline configuration
{
  "mcpServers": {
    "chatspatial-mcp": {
      "command": "uvx",
      "args": [
        "chatspatial==1.6.0",
        "server"
      ]
    }
  }
}

VS Code

Merge this local stdio configuration, replace every placeholder environment value, and restart VS Code. Koskamo has not executed this package.
VS Code configuration
{
  "servers": {
    "chatspatial-mcp": {
      "type": "stdio",
      "command": "uvx",
      "args": [
        "chatspatial==1.6.0",
        "server"
      ]
    }
  }
}

Claude Desktop

Merge this local stdio configuration, replace every placeholder environment value, and restart Claude Desktop. Koskamo has not executed this package.
Claude Desktop configuration
{
  "mcpServers": {
    "chatspatial-mcp": {
      "command": "uvx",
      "args": [
        "chatspatial==1.6.0",
        "server"
      ]
    }
  }
}

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