Koskamo

PIASO MCP

An MCP server that makes the PIASO single-cell omics ecosystem first-class for coding agents. It provides agent-neutral knowledge and tooling for precise integrative analysis of single-cell omics data, including scRNA-seq, scATAC-seq, and spatial transcriptomics. It supports workflows such as end-to-end analysis, ligand-receptor communication, and cell-type annotation using PIASOmarkerDB.

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Package and access

Local package with source-attributed installation metadata. Koskamo does not execute packages during review.

PIASO MCP logo, by The Fishell LaboratoryCommunity listingLocal stdioSource reviewed; not executedPublished by The Fishell Laboratory
You need:pip install piaso-toolspip install cosgpip install larispip install emergene
Vendor documentation

What you can do with it

  • Perform end-to-end scRNA-seq analysis including clustering and marker detection
  • Analyze ligand-receptor interactions and cell-cell communication
  • Conduct marker-based cell-type annotation
  • Infer cell types from PIASOmarkerDB

Source and maintenance

Community listingRegistry 0.1.1
mcp-registry: io.github.genecell/piaso-mcp@0.1.1Source repositoryProject website
Maintenance checked

Packages and installation

Source-provided package data. Koskamo has not executed or live-probed this package.

piaso-mcp 0.1.1

pypi
piaso-mcp package definition
{
  "version": "0.1.1",
  "transport": "stdio",
  "identifier": "piaso-mcp",
  "registryType": "pypi",
  "registryBaseUrl": "https://pypi.org"
}

Tools

Reported by the attributed source; not independently observed by Koskamo.

No tool definitions available.

Connect from your client

Each snippet configures the same source-provided package; replace placeholders before use.

This server is operated by the named third party. Listing and endpoint checks are not an endorsement or a security audit. Review the operator's permissions, terms, and data handling before connecting. How listings are checked and corrected.

Cursor

Merge this local stdio configuration, replace every placeholder environment value, and restart Cursor. Koskamo has not executed this package.
Cursor configuration
{
  "mcpServers": {
    "piaso-mcp": {
      "command": "uvx",
      "args": [
        "piaso-mcp==0.1.1"
      ]
    }
  }
}

Cline

Merge this local stdio configuration, replace every placeholder environment value, and restart Cline. Koskamo has not executed this package.
Cline configuration
{
  "mcpServers": {
    "piaso-mcp": {
      "command": "uvx",
      "args": [
        "piaso-mcp==0.1.1"
      ]
    }
  }
}

VS Code

Merge this local stdio configuration, replace every placeholder environment value, and restart VS Code. Koskamo has not executed this package.
VS Code configuration
{
  "servers": {
    "piaso-mcp": {
      "type": "stdio",
      "command": "uvx",
      "args": [
        "piaso-mcp==0.1.1"
      ]
    }
  }
}

Claude Desktop

Merge this local stdio configuration, replace every placeholder environment value, and restart Claude Desktop. Koskamo has not executed this package.
Claude Desktop configuration
{
  "mcpServers": {
    "piaso-mcp": {
      "command": "uvx",
      "args": [
        "piaso-mcp==0.1.1"
      ]
    }
  }
}

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