Koskamo

OMOPHub MCP

An MCP server that provides AI agents with instant access to the OHDSI ATHENA vocabulary, enabling concept lookup, cross-vocabulary mapping, hierarchy navigation, concept set building, and code validation without local database setup.

Package and access

Local package with source-attributed installation metadata. Koskamo does not execute packages during review.

OMOPHub MCP logo, by OMOPHubCommunity listingLocal stdioSource reviewed; not executedPublished by OMOPHub
You need:Get an API Key Sign up at omophub.com → create an API key in your dashboard
Vendor documentation

What you can do with it

  • Concept lookup for clinical terms
  • Cross-vocabulary mapping between ICD-10 and SNOMED
  • Hierarchy navigation for phenotype definitions
  • Code validation for medical codes

Source and maintenance

Community listingRegistry 1.1.0
mcp-registry: io.github.OMOPHub/omophub-mcp@1.1.0Source repository
Maintenance checked

Packages and installation

Source-provided package data. Koskamo has not executed or live-probed this package.

@omophub/omophub-mcp 1.1.0

npm
@omophub/omophub-mcp package definition
{
  "version": "1.1.0",
  "transport": "stdio",
  "identifier": "@omophub/omophub-mcp",
  "registryType": "npm",
  "environmentVariables": [
    {
      "name": "OMOPHUB_API_KEY",
      "format": "string",
      "isRequired": true,
      "description": "Your OMOPHub API key. Get one at https://omophub.com/dashboard/api-keys"
    }
  ]
}

Tools

Reported by the attributed source; not independently observed by Koskamo.

No tool definitions available.

Connect from your client

Each snippet configures the same source-provided package; replace placeholders before use.

This server is operated by the named third party. Listing and endpoint checks are not an endorsement or a security audit. Review the operator's permissions, terms, and data handling before connecting. How listings are checked and corrected.

Cursor

Merge this local stdio configuration, replace every placeholder environment value, and restart Cursor. Koskamo has not executed this package.
Cursor configuration
{
  "mcpServers": {
    "omophub-mcp": {
      "command": "npx",
      "args": [
        "-y",
        "@omophub/omophub-mcp@1.1.0"
      ],
      "env": {
        "OMOPHUB_API_KEY": "<YOUR_OMOPHUB_API_KEY>"
      }
    }
  }
}

Cline

Merge this local stdio configuration, replace every placeholder environment value, and restart Cline. Koskamo has not executed this package.
Cline configuration
{
  "mcpServers": {
    "omophub-mcp": {
      "command": "npx",
      "args": [
        "-y",
        "@omophub/omophub-mcp@1.1.0"
      ],
      "env": {
        "OMOPHUB_API_KEY": "<YOUR_OMOPHUB_API_KEY>"
      }
    }
  }
}

VS Code

Merge this local stdio configuration, replace every placeholder environment value, and restart VS Code. Koskamo has not executed this package.
VS Code configuration
{
  "servers": {
    "omophub-mcp": {
      "type": "stdio",
      "command": "npx",
      "args": [
        "-y",
        "@omophub/omophub-mcp@1.1.0"
      ],
      "env": {
        "OMOPHUB_API_KEY": "<YOUR_OMOPHUB_API_KEY>"
      }
    }
  }
}

Claude Desktop

Merge this local stdio configuration, replace every placeholder environment value, and restart Claude Desktop. Koskamo has not executed this package.
Claude Desktop configuration
{
  "mcpServers": {
    "omophub-mcp": {
      "command": "npx",
      "args": [
        "-y",
        "@omophub/omophub-mcp@1.1.0"
      ],
      "env": {
        "OMOPHUB_API_KEY": "<YOUR_OMOPHUB_API_KEY>"
      }
    }
  }
}

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