MyGene.info MCP

A community MCP server provided by Pipeworx that interfaces with the MyGene.info API to perform biological gene annotation. It allows AI agents to query gene information by name or ID, retrieve batch annotations for multiple identifiers, access metadata, and fetch species taxonomy details, joining data from NCBI, Ensembl, UniProt, KEGG, and OMIM.

Visit Pipeworx

Package and access

Local package with source-attributed installation metadata. Koskamo does not execute packages during review.

Community listingLocal stdioSource reviewed; not executedPublished by Pipeworx

You need:free account at https://pipeworx.io/signup

Vendor documentation

What you can do with it

Perform full-text gene queries with optional species and field filters
Retrieve detailed annotations for a single gene ID
Batch-resolve up to 1000 gene symbols or IDs in one request
Fetch species taxonomy information

Source and maintenance

Community listingRegistry 0.2.0

mcp-registry: io.github.pipeworx-io/mygene-info@0.2.0 Source repository Project website

Maintenance checked: Oct 31, 2026, 10:27 PM UTC

Packages and installation

Source-provided package data. Koskamo has not executed or live-probed this package.

@pipeworx/mcp-mygene-info 0.2.0

npm

@pipeworx/mcp-mygene-info package definition

{
  "version": "0.2.0",
  "transport": "stdio",
  "identifier": "@pipeworx/mcp-mygene-info",
  "registryType": "npm",
  "environmentVariables": [
    {
      "name": "PIPEWORX_API_KEY",
      "description": "Optional Pipeworx API key. Without it calls are anonymous and capped daily; a free key raises the cap."
    }
  ]
}

Tools

Reported by the attributed source; not independently observed by Koskamo.

No tool definitions available.

Connect from your client

Each snippet configures the same source-provided package; replace placeholders before use.

This server is operated by the named third party. Listing and endpoint checks are not an endorsement or a security audit. Review the operator's permissions, terms, and data handling before connecting. How listings are checked and corrected.

Cursor

Merge this local stdio configuration, replace every placeholder environment value, and restart Cursor. Koskamo has not executed this package.

Cursor configuration

{
  "mcpServers": {
    "mygene-info-mcp": {
      "command": "npx",
      "args": [
        "-y",
        "@pipeworx/mcp-mygene-info@0.2.0"
      ],
      "env": {
        "PIPEWORX_API_KEY": "<YOUR_PIPEWORX_API_KEY>"
      }
    }
  }
}

Cline

Merge this local stdio configuration, replace every placeholder environment value, and restart Cline. Koskamo has not executed this package.

Cline configuration

{
  "mcpServers": {
    "mygene-info-mcp": {
      "command": "npx",
      "args": [
        "-y",
        "@pipeworx/mcp-mygene-info@0.2.0"
      ],
      "env": {
        "PIPEWORX_API_KEY": "<YOUR_PIPEWORX_API_KEY>"
      }
    }
  }
}

VS Code

Merge this local stdio configuration, replace every placeholder environment value, and restart VS Code. Koskamo has not executed this package.

VS Code configuration

{
  "servers": {
    "mygene-info-mcp": {
      "type": "stdio",
      "command": "npx",
      "args": [
        "-y",
        "@pipeworx/mcp-mygene-info@0.2.0"
      ],
      "env": {
        "PIPEWORX_API_KEY": "<YOUR_PIPEWORX_API_KEY>"
      }
    }
  }
}

Claude Desktop

Merge this local stdio configuration, replace every placeholder environment value, and restart Claude Desktop. Koskamo has not executed this package.

Claude Desktop configuration

{
  "mcpServers": {
    "mygene-info-mcp": {
      "command": "npx",
      "args": [
        "-y",
        "@pipeworx/mcp-mygene-info@0.2.0"
      ],
      "env": {
        "PIPEWORX_API_KEY": "<YOUR_PIPEWORX_API_KEY>"
      }
    }
  }
}

Let your agent find its tools

Find servers like MyGene.info MCP from your agent. Add Koskamo once to search the index for endpoints, access requirements, and client setup. Public discovery needs no key.

Connect Koskamo Explore workflows

See all 1,977