Genomics MCP
A local Model Context Protocol server that allows AI agents to retrieve real genomic data and reference evidence from public archives like EGA, ENA, ENCODE, GEO, and NCBI, as well as local indexed files. It supports region queries with explicit assembly coordinates, variant lookups, and gene searches, reporting provenance and source status for all results. It is designed for computational biologists and researchers to pull data without writing integration code.
Package and access
Local package with source-attributed installation metadata. Koskamo does not execute packages during review.
What you can do with it
- Retrieve reads from EGA files overlapping specific genomic intervals
- Look up reference bases and ClinVar records for specific variants
- Download ENA FASTA sequences and display base pairs
- Compare genotypes across multiple VCF files in a local folder
Source and maintenance
- Maintenance checked
Packages and installation
Source-provided package data. Koskamo has not executed or live-probed this package.
https://github.com/rewire-bio/genomics-mcp/releases/download/v0.1.0/genomics-mcp-0.1.0.mcpb
{
"transport": "stdio",
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"identifier": "https://github.com/rewire-bio/genomics-mcp/releases/download/v0.1.0/genomics-mcp-0.1.0.mcpb",
"registryType": "mcpb"
}Tools
Reported by the attributed source; not independently observed by Koskamo.
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