Koskamo

cxg-census-mcp

An open-source, community-maintained Model Context Protocol server that enables LLM agents to query the CZ CELLxGENE Discover Census single-cell RNA-seq atlas. It provides ontology-aware filtering using CL, UBERON, and EFO ontologies, manages query costs with caps, and ensures full provenance and attribution on every response. It is designed for integration with clients like Claude, Cursor, and other MCP-compatible tools to facilitate bioinformatics research and single-cell data exploration.

Package and access

Local package with source-attributed installation metadata. Koskamo does not execute packages during review.

cxg-census-mcp logo, by MaxMLangCommunity listingLocal stdioSource reviewed; not executedPublished by MaxMLang
Vendor documentation

What you can do with it

  • Query single-cell RNA-seq data using natural language
  • Filter cell types using ontology terms like CL or UBERON
  • Visualize cell-type composition of specific tissues
  • Retrieve provenance and attribution for data responses

Source and maintenance

Community listingRegistry 0.1.2
mcp-registry: io.github.MaxMLang/cxg-census-mcp@0.1.2Source repositoryProject website
Last repository push
Latest release
v0.1.2
Maintenance checked

Packages and installation

Source-provided package data. Koskamo has not executed or live-probed this package.

cxg-census-mcp 0.1.2

pypiuvx
cxg-census-mcp package definition
{
  "version": "0.1.2",
  "transport": "stdio",
  "identifier": "cxg-census-mcp",
  "runtimeHint": "uvx",
  "registryType": "pypi",
  "registryBaseUrl": "https://pypi.org",
  "runtimeArguments": [
    {
      "name": "--from",
      "type": "named",
      "value": "cxg-census-mcp[census]"
    },
    {
      "type": "positional",
      "value": "cxg-census-mcp"
    }
  ]
}

Tools

Reported by the attributed source; not independently observed by Koskamo.

No tool definitions available.

Maintenance history

Public check and source-refresh events. Editorial and ownership records remain private.

  • · repository · passed · metadata changed · updated
  • · backfill · recorded · Pre-expansion baseline; unobserved rich metadata remains unknown

Connect from your client

Each snippet configures the same source-provided package; replace placeholders before use.

This server is operated by the named third party. Listing and endpoint checks are not an endorsement or a security audit. Review the operator's permissions, terms, and data handling before connecting. How listings are checked and corrected.

Cursor

Merge this local stdio configuration, replace every placeholder environment value, and restart Cursor. Koskamo has not executed this package.
Cursor configuration
{
  "mcpServers": {
    "cxg-census-mcp": {
      "command": "uvx",
      "args": [
        "cxg-census-mcp==0.1.2"
      ]
    }
  }
}

Cline

Merge this local stdio configuration, replace every placeholder environment value, and restart Cline. Koskamo has not executed this package.
Cline configuration
{
  "mcpServers": {
    "cxg-census-mcp": {
      "command": "uvx",
      "args": [
        "cxg-census-mcp==0.1.2"
      ]
    }
  }
}

VS Code

Merge this local stdio configuration, replace every placeholder environment value, and restart VS Code. Koskamo has not executed this package.
VS Code configuration
{
  "servers": {
    "cxg-census-mcp": {
      "type": "stdio",
      "command": "uvx",
      "args": [
        "cxg-census-mcp==0.1.2"
      ]
    }
  }
}

Claude Desktop

Merge this local stdio configuration, replace every placeholder environment value, and restart Claude Desktop. Koskamo has not executed this package.
Claude Desktop configuration
{
  "mcpServers": {
    "cxg-census-mcp": {
      "command": "uvx",
      "args": [
        "cxg-census-mcp==0.1.2"
      ]
    }
  }
}

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