Koskamo

brapi-mcp-server

A collaborative BrAPI v2.1 workspace for multi-agent research via MCP. It allows agents to search studies, germplasm, genotypes, and observations across multiple BrAPI v2-compliant servers like Breedbase, T3, and Sweetpotatobase. It supports walking pedigrees, building phenotype/genotype matrices, and querying large results in SQL.

Package and access

Local package with source-attributed installation metadata. Koskamo does not execute packages during review.

brapi-mcp-server logo, by cyanheadsCommunity listingLocal stdioSource reviewed; not executedPublished by cyanheads
Vendor documentation

What you can do with it

  • Search studies by crop, trial type, season, location, or program
  • Find germplasm by name, synonym, accession, PUI, crop, or free text
  • Walk ancestry or descendancy as a deduplicated DAG with cycle detection
  • Pull observation records by study, germplasm, variable, season, or unit

Source and maintenance

Community listingRegistry 0.10.1
mcp-registry: io.github.cyanheads/brapi-mcp-server@0.10.1Source repository
Maintenance checked

Packages and installation

Source-provided package data. Koskamo has not executed or live-probed this package.

@cyanheads/brapi-mcp-server 0.10.1

npmnpx
@cyanheads/brapi-mcp-server package definition
{
  "version": "0.10.1",
  "transport": "stdio",
  "identifier": "@cyanheads/brapi-mcp-server",
  "runtimeHint": "npx",
  "registryType": "npm",
  "registryBaseUrl": "https://registry.npmjs.org",
  "environmentVariables": [
    {
      "name": "BRAPI_DEFAULT_BASE_URL",
      "format": "string",
      "description": "Default BrAPI v2 base URL. Optional — connections can be opened at runtime via the brapi_connect tool instead."
    },
    {
      "name": "BRAPI_ENABLE_WRITES",
      "format": "string",
      "default": "false",
      "description": "Opt-in flag for the write surface (brapi_submit_observations). Off by default — the tool is omitted from tools/list unless the operator opts in."
    },
    {
      "name": "BRAPI_PAGE_SIZE",
      "format": "string",
      "default": "1000",
      "description": "Upstream pageSize used during canvas spillover walks (decoupled from BRAPI_LOAD_LIMIT). Dataframe ceiling = pageSize × 50 pages, capped at 50,000 rows."
    },
    {
      "name": "MCP_LOG_LEVEL",
      "format": "string",
      "default": "info",
      "description": "Sets the minimum log level for output (e.g., 'debug', 'info', 'warn')."
    }
  ]
}

Tools

Reported by the attributed source; not independently observed by Koskamo.

No tool definitions available.

Connect from your client

Each snippet configures the same source-provided package; replace placeholders before use.

This server is operated by the named third party. Listing and endpoint checks are not an endorsement or a security audit. Review the operator's permissions, terms, and data handling before connecting. How listings are checked and corrected.

Cursor

Merge this local stdio configuration, replace every placeholder environment value, and restart Cursor. Koskamo has not executed this package.
Cursor configuration
{
  "mcpServers": {
    "brapi-mcp-server": {
      "command": "npx",
      "args": [
        "-y",
        "@cyanheads/brapi-mcp-server@0.10.1"
      ],
      "env": {
        "BRAPI_DEFAULT_BASE_URL": "<YOUR_BRAPI_DEFAULT_BASE_URL>",
        "BRAPI_ENABLE_WRITES": "<YOUR_BRAPI_ENABLE_WRITES>",
        "BRAPI_PAGE_SIZE": "<YOUR_BRAPI_PAGE_SIZE>",
        "MCP_LOG_LEVEL": "<YOUR_MCP_LOG_LEVEL>"
      }
    }
  }
}

Cline

Merge this local stdio configuration, replace every placeholder environment value, and restart Cline. Koskamo has not executed this package.
Cline configuration
{
  "mcpServers": {
    "brapi-mcp-server": {
      "command": "npx",
      "args": [
        "-y",
        "@cyanheads/brapi-mcp-server@0.10.1"
      ],
      "env": {
        "BRAPI_DEFAULT_BASE_URL": "<YOUR_BRAPI_DEFAULT_BASE_URL>",
        "BRAPI_ENABLE_WRITES": "<YOUR_BRAPI_ENABLE_WRITES>",
        "BRAPI_PAGE_SIZE": "<YOUR_BRAPI_PAGE_SIZE>",
        "MCP_LOG_LEVEL": "<YOUR_MCP_LOG_LEVEL>"
      }
    }
  }
}

VS Code

Merge this local stdio configuration, replace every placeholder environment value, and restart VS Code. Koskamo has not executed this package.
VS Code configuration
{
  "servers": {
    "brapi-mcp-server": {
      "type": "stdio",
      "command": "npx",
      "args": [
        "-y",
        "@cyanheads/brapi-mcp-server@0.10.1"
      ],
      "env": {
        "BRAPI_DEFAULT_BASE_URL": "<YOUR_BRAPI_DEFAULT_BASE_URL>",
        "BRAPI_ENABLE_WRITES": "<YOUR_BRAPI_ENABLE_WRITES>",
        "BRAPI_PAGE_SIZE": "<YOUR_BRAPI_PAGE_SIZE>",
        "MCP_LOG_LEVEL": "<YOUR_MCP_LOG_LEVEL>"
      }
    }
  }
}

Claude Desktop

Merge this local stdio configuration, replace every placeholder environment value, and restart Claude Desktop. Koskamo has not executed this package.
Claude Desktop configuration
{
  "mcpServers": {
    "brapi-mcp-server": {
      "command": "npx",
      "args": [
        "-y",
        "@cyanheads/brapi-mcp-server@0.10.1"
      ],
      "env": {
        "BRAPI_DEFAULT_BASE_URL": "<YOUR_BRAPI_DEFAULT_BASE_URL>",
        "BRAPI_ENABLE_WRITES": "<YOUR_BRAPI_ENABLE_WRITES>",
        "BRAPI_PAGE_SIZE": "<YOUR_BRAPI_PAGE_SIZE>",
        "MCP_LOG_LEVEL": "<YOUR_MCP_LOG_LEVEL>"
      }
    }
  }
}

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