Koskamo

AWS HealthOmics MCP

An open-source MCP server provided by AWS Labs that enables AI agents to interact with AWS HealthOmics services. It allows users to generate, run, and debug life science workflows, facilitating healthcare data management and lifesciences workflow development within the AWS ecosystem.

Package and access

Local package with source-attributed installation metadata. Koskamo does not execute packages during review.

AWS HealthOmics MCP logo, by AWSCommunity listingLocal stdioSource reviewed; not executedPublished by AWS
Vendor documentation

What its tools do

73 tools, grouped by the hints the source reports. Hints are self-declared, not verified behavior.

Not annotated (73)

0 of 73 have a description · 0 of 73 declare behavior hints

Checks and signals

Each line is separate evidence, not a trust score.

  • Popularity 9,863 GitHub stars

What you can do with it

  • Generate life science workflows
  • Run genomic analysis workflows
  • Debug lifesciences processes
  • Manage healthcare data

Source and maintenance

Community listingApache-2.0
docker-mcp: aws-healthomicsSource repositoryProject website
Last repository push
Latest release
2026.10.20261030201955
Maintenance checked

Packages and installation

Source-provided package data. Koskamo has not executed or live-probed this package.

mcp/aws-healthomics-mcp-server@sha256:ec0cd4776cbe1303816aaeaf8a8cbca57fbbe4805dff19a8898ba711275d1410

oci
mcp/aws-healthomics-mcp-server@sha256:ec0cd4776cbe1303816aaeaf8a8cbca57fbbe4805dff19a8898ba711275d1410 package definition
{
  "transport": "stdio",
  "identifier": "mcp/aws-healthomics-mcp-server@sha256:ec0cd4776cbe1303816aaeaf8a8cbca57fbbe4805dff19a8898ba711275d1410",
  "registryType": "oci",
  "registryBaseUrl": "https://registry-1.docker.io"
}

Tools

Reported by the attributed source; not independently observed by Koskamo.

ActivateAHOReadSets
Reported by the attributed source; not independently observed by Koskamo.
ActivateAHOReadSets input schema
{
  "type": "",
  "required": null,
  "properties": null
}
AnalyzeAHORunPerformance
Reported by the attributed source; not independently observed by Koskamo.
AnalyzeAHORunPerformance input schema
{
  "type": "",
  "required": null,
  "properties": null
}
CancelAHORunBatch
Reported by the attributed source; not independently observed by Koskamo.
CancelAHORunBatch input schema
{
  "type": "",
  "required": null,
  "properties": null
}
CheckContainerAvailability
Reported by the attributed source; not independently observed by Koskamo.
CheckContainerAvailability input schema
{
  "type": "",
  "required": null,
  "properties": null
}
CloneContainerToECR
Reported by the attributed source; not independently observed by Koskamo.
CloneContainerToECR input schema
{
  "type": "",
  "required": null,
  "properties": null
}
CreateAHOConfiguration
Reported by the attributed source; not independently observed by Koskamo.
CreateAHOConfiguration input schema
{
  "type": "",
  "required": null,
  "properties": null
}
CreateAHORunCache
Reported by the attributed source; not independently observed by Koskamo.
CreateAHORunCache input schema
{
  "type": "",
  "required": null,
  "properties": null
}
CreateAHORunGroup
Reported by the attributed source; not independently observed by Koskamo.
CreateAHORunGroup input schema
{
  "type": "",
  "required": null,
  "properties": null
}
CreateAHOSequenceStore
Reported by the attributed source; not independently observed by Koskamo.
CreateAHOSequenceStore input schema
{
  "type": "",
  "required": null,
  "properties": null
}
CreateAHOWorkflow
Reported by the attributed source; not independently observed by Koskamo.
CreateAHOWorkflow input schema
{
  "type": "",
  "required": null,
  "properties": null
}
CreateAHOWorkflowVersion
Reported by the attributed source; not independently observed by Koskamo.
CreateAHOWorkflowVersion input schema
{
  "type": "",
  "required": null,
  "properties": null
}
CreateCodeConnection
Reported by the attributed source; not independently observed by Koskamo.
CreateCodeConnection input schema
{
  "type": "",
  "required": null,
  "properties": null
}
CreateContainerRegistryMap
Reported by the attributed source; not independently observed by Koskamo.
CreateContainerRegistryMap input schema
{
  "type": "",
  "required": null,
  "properties": null
}
CreatePullThroughCacheForHealthOmics
Reported by the attributed source; not independently observed by Koskamo.
CreatePullThroughCacheForHealthOmics input schema
{
  "type": "",
  "required": null,
  "properties": null
}
DeleteAHOBatch
Reported by the attributed source; not independently observed by Koskamo.
DeleteAHOBatch input schema
{
  "type": "",
  "required": null,
  "properties": null
}
DeleteAHOConfiguration
Reported by the attributed source; not independently observed by Koskamo.
DeleteAHOConfiguration input schema
{
  "type": "",
  "required": null,
  "properties": null
}
DeleteAHORunBatch
Reported by the attributed source; not independently observed by Koskamo.
DeleteAHORunBatch input schema
{
  "type": "",
  "required": null,
  "properties": null
}
DiagnoseAHORunFailure
Reported by the attributed source; not independently observed by Koskamo.
DiagnoseAHORunFailure input schema
{
  "type": "",
  "required": null,
  "properties": null
}
GenerateAHORunTimeline
Reported by the attributed source; not independently observed by Koskamo.
GenerateAHORunTimeline input schema
{
  "type": "",
  "required": null,
  "properties": null
}
GetAHOBatch
Reported by the attributed source; not independently observed by Koskamo.
GetAHOBatch input schema
{
  "type": "",
  "required": null,
  "properties": null
}
GetAHOConfiguration
Reported by the attributed source; not independently observed by Koskamo.
GetAHOConfiguration input schema
{
  "type": "",
  "required": null,
  "properties": null
}
GetAHOReadSetExportJob
Reported by the attributed source; not independently observed by Koskamo.
GetAHOReadSetExportJob input schema
{
  "type": "",
  "required": null,
  "properties": null
}
GetAHOReadSetImportJob
Reported by the attributed source; not independently observed by Koskamo.
GetAHOReadSetImportJob input schema
{
  "type": "",
  "required": null,
  "properties": null
}
GetAHOReadSetMetadata
Reported by the attributed source; not independently observed by Koskamo.
GetAHOReadSetMetadata input schema
{
  "type": "",
  "required": null,
  "properties": null
}
GetAHOReferenceImportJob
Reported by the attributed source; not independently observed by Koskamo.
GetAHOReferenceImportJob input schema
{
  "type": "",
  "required": null,
  "properties": null
}
GetAHOReferenceMetadata
Reported by the attributed source; not independently observed by Koskamo.
GetAHOReferenceMetadata input schema
{
  "type": "",
  "required": null,
  "properties": null
}
GetAHOReferenceStore
Reported by the attributed source; not independently observed by Koskamo.
GetAHOReferenceStore input schema
{
  "type": "",
  "required": null,
  "properties": null
}
GetAHORun
Reported by the attributed source; not independently observed by Koskamo.
GetAHORun input schema
{
  "type": "",
  "required": null,
  "properties": null
}
GetAHORunCache
Reported by the attributed source; not independently observed by Koskamo.
GetAHORunCache input schema
{
  "type": "",
  "required": null,
  "properties": null
}
GetAHORunEngineLogs
Reported by the attributed source; not independently observed by Koskamo.
GetAHORunEngineLogs input schema
{
  "type": "",
  "required": null,
  "properties": null
}
GetAHORunGroup
Reported by the attributed source; not independently observed by Koskamo.
GetAHORunGroup input schema
{
  "type": "",
  "required": null,
  "properties": null
}
GetAHORunLogs
Reported by the attributed source; not independently observed by Koskamo.
GetAHORunLogs input schema
{
  "type": "",
  "required": null,
  "properties": null
}
GetAHORunManifestLogs
Reported by the attributed source; not independently observed by Koskamo.
GetAHORunManifestLogs input schema
{
  "type": "",
  "required": null,
  "properties": null
}
GetAHORunTask
Reported by the attributed source; not independently observed by Koskamo.
GetAHORunTask input schema
{
  "type": "",
  "required": null,
  "properties": null
}
GetAHOSequenceStore
Reported by the attributed source; not independently observed by Koskamo.
GetAHOSequenceStore input schema
{
  "type": "",
  "required": null,
  "properties": null
}
GetAHOSupportedRegions
Reported by the attributed source; not independently observed by Koskamo.
GetAHOSupportedRegions input schema
{
  "type": "",
  "required": null,
  "properties": null
}
GetAHOTaskLogs
Reported by the attributed source; not independently observed by Koskamo.
GetAHOTaskLogs input schema
{
  "type": "",
  "required": null,
  "properties": null
}
GetAHOWorkflow
Reported by the attributed source; not independently observed by Koskamo.
GetAHOWorkflow input schema
{
  "type": "",
  "required": null,
  "properties": null
}
GetCodeConnection
Reported by the attributed source; not independently observed by Koskamo.
GetCodeConnection input schema
{
  "type": "",
  "required": null,
  "properties": null
}
GetSupportedFileTypes
Reported by the attributed source; not independently observed by Koskamo.
GetSupportedFileTypes input schema
{
  "type": "",
  "required": null,
  "properties": null
}
GrantHealthOmicsRepositoryAccess
Reported by the attributed source; not independently observed by Koskamo.
GrantHealthOmicsRepositoryAccess input schema
{
  "type": "",
  "required": null,
  "properties": null
}
LintAHOWorkflowBundle
Reported by the attributed source; not independently observed by Koskamo.
LintAHOWorkflowBundle input schema
{
  "type": "",
  "required": null,
  "properties": null
}
LintAHOWorkflowDefinition
Reported by the attributed source; not independently observed by Koskamo.
LintAHOWorkflowDefinition input schema
{
  "type": "",
  "required": null,
  "properties": null
}
ListAHOBatches
Reported by the attributed source; not independently observed by Koskamo.
ListAHOBatches input schema
{
  "type": "",
  "required": null,
  "properties": null
}
ListAHOConfigurations
Reported by the attributed source; not independently observed by Koskamo.
ListAHOConfigurations input schema
{
  "type": "",
  "required": null,
  "properties": null
}
ListAHOReadSetExportJobs
Reported by the attributed source; not independently observed by Koskamo.
ListAHOReadSetExportJobs input schema
{
  "type": "",
  "required": null,
  "properties": null
}
ListAHOReadSetImportJobs
Reported by the attributed source; not independently observed by Koskamo.
ListAHOReadSetImportJobs input schema
{
  "type": "",
  "required": null,
  "properties": null
}
ListAHOReadSets
Reported by the attributed source; not independently observed by Koskamo.
ListAHOReadSets input schema
{
  "type": "",
  "required": null,
  "properties": null
}
ListAHOReferenceImportJobs
Reported by the attributed source; not independently observed by Koskamo.
ListAHOReferenceImportJobs input schema
{
  "type": "",
  "required": null,
  "properties": null
}
ListAHOReferenceStores
Reported by the attributed source; not independently observed by Koskamo.
ListAHOReferenceStores input schema
{
  "type": "",
  "required": null,
  "properties": null
}
ListAHOReferences
Reported by the attributed source; not independently observed by Koskamo.
ListAHOReferences input schema
{
  "type": "",
  "required": null,
  "properties": null
}
ListAHORunCaches
Reported by the attributed source; not independently observed by Koskamo.
ListAHORunCaches input schema
{
  "type": "",
  "required": null,
  "properties": null
}
ListAHORunGroups
Reported by the attributed source; not independently observed by Koskamo.
ListAHORunGroups input schema
{
  "type": "",
  "required": null,
  "properties": null
}
ListAHORunTasks
Reported by the attributed source; not independently observed by Koskamo.
ListAHORunTasks input schema
{
  "type": "",
  "required": null,
  "properties": null
}
ListAHORuns
Reported by the attributed source; not independently observed by Koskamo.
ListAHORuns input schema
{
  "type": "",
  "required": null,
  "properties": null
}
ListAHORunsInBatch
Reported by the attributed source; not independently observed by Koskamo.
ListAHORunsInBatch input schema
{
  "type": "",
  "required": null,
  "properties": null
}
ListAHOSequenceStores
Reported by the attributed source; not independently observed by Koskamo.
ListAHOSequenceStores input schema
{
  "type": "",
  "required": null,
  "properties": null
}
ListAHOWorkflowVersions
Reported by the attributed source; not independently observed by Koskamo.
ListAHOWorkflowVersions input schema
{
  "type": "",
  "required": null,
  "properties": null
}
ListAHOWorkflows
Reported by the attributed source; not independently observed by Koskamo.
ListAHOWorkflows input schema
{
  "type": "",
  "required": null,
  "properties": null
}
ListCodeConnections
Reported by the attributed source; not independently observed by Koskamo.
ListCodeConnections input schema
{
  "type": "",
  "required": null,
  "properties": null
}
ListECRRepositories
Reported by the attributed source; not independently observed by Koskamo.
ListECRRepositories input schema
{
  "type": "",
  "required": null,
  "properties": null
}
ListPullThroughCacheRules
Reported by the attributed source; not independently observed by Koskamo.
ListPullThroughCacheRules input schema
{
  "type": "",
  "required": null,
  "properties": null
}
PackageAHOWorkflow
Reported by the attributed source; not independently observed by Koskamo.
PackageAHOWorkflow input schema
{
  "type": "",
  "required": null,
  "properties": null
}
SearchGenomicsFiles
Reported by the attributed source; not independently observed by Koskamo.
SearchGenomicsFiles input schema
{
  "type": "",
  "required": null,
  "properties": null
}
StartAHOReadSetExportJob
Reported by the attributed source; not independently observed by Koskamo.
StartAHOReadSetExportJob input schema
{
  "type": "",
  "required": null,
  "properties": null
}
StartAHOReadSetImportJob
Reported by the attributed source; not independently observed by Koskamo.
StartAHOReadSetImportJob input schema
{
  "type": "",
  "required": null,
  "properties": null
}
StartAHOReferenceImportJob
Reported by the attributed source; not independently observed by Koskamo.
StartAHOReferenceImportJob input schema
{
  "type": "",
  "required": null,
  "properties": null
}
StartAHORun
Reported by the attributed source; not independently observed by Koskamo.
StartAHORun input schema
{
  "type": "",
  "required": null,
  "properties": null
}
StartAHORunBatch
Reported by the attributed source; not independently observed by Koskamo.
StartAHORunBatch input schema
{
  "type": "",
  "required": null,
  "properties": null
}
UpdateAHORunCache
Reported by the attributed source; not independently observed by Koskamo.
UpdateAHORunCache input schema
{
  "type": "",
  "required": null,
  "properties": null
}
UpdateAHORunGroup
Reported by the attributed source; not independently observed by Koskamo.
UpdateAHORunGroup input schema
{
  "type": "",
  "required": null,
  "properties": null
}
UpdateAHOSequenceStore
Reported by the attributed source; not independently observed by Koskamo.
UpdateAHOSequenceStore input schema
{
  "type": "",
  "required": null,
  "properties": null
}
ValidateHealthOmicsECRConfig
Reported by the attributed source; not independently observed by Koskamo.
ValidateHealthOmicsECRConfig input schema
{
  "type": "",
  "required": null,
  "properties": null
}

Maintenance history

Public check and source-refresh events. Editorial and ownership records remain private.

  • · repository · passed · metadata changed · updated
  • · backfill · recorded · Pre-expansion baseline; unobserved rich metadata remains unknown

Connect from your client

Each snippet configures the same source-provided package; replace placeholders before use.

This server is operated by the named third party. Listing and endpoint checks are not an endorsement or a security audit. Review the operator's permissions, terms, and data handling before connecting. How listings are checked and corrected.

Cursor

Merge this local stdio configuration, replace every placeholder environment value, and restart Cursor. Koskamo has not executed this package.
Cursor configuration
{
  "mcpServers": {
    "aws-healthomics-mcp": {
      "command": "docker",
      "args": [
        "run",
        "-i",
        "--rm",
        "mcp/aws-healthomics-mcp-server@sha256:ec0cd4776cbe1303816aaeaf8a8cbca57fbbe4805dff19a8898ba711275d1410"
      ]
    }
  }
}

Cline

Merge this local stdio configuration, replace every placeholder environment value, and restart Cline. Koskamo has not executed this package.
Cline configuration
{
  "mcpServers": {
    "aws-healthomics-mcp": {
      "command": "docker",
      "args": [
        "run",
        "-i",
        "--rm",
        "mcp/aws-healthomics-mcp-server@sha256:ec0cd4776cbe1303816aaeaf8a8cbca57fbbe4805dff19a8898ba711275d1410"
      ]
    }
  }
}

VS Code

Merge this local stdio configuration, replace every placeholder environment value, and restart VS Code. Koskamo has not executed this package.
VS Code configuration
{
  "servers": {
    "aws-healthomics-mcp": {
      "type": "stdio",
      "command": "docker",
      "args": [
        "run",
        "-i",
        "--rm",
        "mcp/aws-healthomics-mcp-server@sha256:ec0cd4776cbe1303816aaeaf8a8cbca57fbbe4805dff19a8898ba711275d1410"
      ]
    }
  }
}

Claude Desktop

Merge this local stdio configuration, replace every placeholder environment value, and restart Claude Desktop. Koskamo has not executed this package.
Claude Desktop configuration
{
  "mcpServers": {
    "aws-healthomics-mcp": {
      "command": "docker",
      "args": [
        "run",
        "-i",
        "--rm",
        "mcp/aws-healthomics-mcp-server@sha256:ec0cd4776cbe1303816aaeaf8a8cbca57fbbe4805dff19a8898ba711275d1410"
      ]
    }
  }
}

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